3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00071

Details:

PFam ID : PF00071

PFam Domain Description : Ras family

Number of Sequence in 50% Dataset : 1242

Number of Sequence in Full Dataset : 5634

Average sequence length: 149.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00071	Q4TFR8_TETNG_1_74	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00071	D2V8X6_NAEGR_205_287	99.9

Sequence based PCA Plot of the family - PF00071 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=135 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8
Motif4 Start=125 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay