3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01194

Details:

PFam ID : PF01194

PFam Domain Description : RNA polymerases N / 8 kDa subunit

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 172

Average sequence length: 60.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01194	E3W040_MIMIV_1_71	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01194	E3W040_MIMIV_1_71	100

Sequence based PCA Plot of the family - PF01194 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=27
Motif2 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay