3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08633

Details:

PFam ID : PF08633

PFam Domain Description : Rox3 mediator complex subunit

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 51

Average sequence length: 174.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08633	E7NEL2_YEASO_23_139	46.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08633	A7EUM6_SCLS1_107_321	96

Sequence based PCA Plot of the family - PF08633 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay