3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13467

Details:

PFam ID : PF13467

PFam Domain Description : Ribbon-helix-helix domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 229

Average sequence length: 68.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13467	E6V3B1_VARPD_405_482	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13467	Q3K7V4_PSEPF_33_102	100

Sequence based PCA Plot of the family - PF13467 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=2 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay