3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03871

Details:

PFam ID : PF03871

PFam Domain Description : RNA polymerase Rpb5, N-terminal domain

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 171

Average sequence length: 94.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03871	Q9P8M6_EMENI_19_103	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03871	A5E1U0_LODEL_1_65	100

Sequence based PCA Plot of the family - PF03871 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=78 Length=8
Motif3 Start=19 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay