3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02788

Details:

PFam ID : PF02788

PFam Domain Description : Ribulose bisphosphate carboxylase large chain, N-terminal domain

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 587

Average sequence length: 104.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02788	D7AAR4_STAND_82_130	40.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02788	Q5J096_9BACT_1_25	96.9

Sequence based PCA Plot of the family - PF02788 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=42

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay