3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00076

Details:

PFam ID : PF00076

PFam Domain Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Number of Sequence in 50% Dataset : 1898

Number of Sequence in Full Dataset : 14559

Average sequence length: 67.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00076	D8TI62_VOLCA_152_196	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00076	Q4QA67_LEIMA_100_150	99.9

Sequence based PCA Plot of the family - PF00076 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=58 Length=8
Motif3 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay