3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09217

Details:

PFam ID : PF09217

PFam Domain Description : Restriction endonuclease EcoRII, N-terminal

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 24

Average sequence length: 134.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09217	A3X5U6_9RHOB_2_99	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09217	A5FU96_ACICJ_12_167	100

Sequence based PCA Plot of the family - PF09217 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=8
Motif4 Start=78 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay