3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13890

Details:

PFam ID : PF13890

PFam Domain Description : Rab3 GTPase-activating protein catalytic subunit

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 78

Average sequence length: 155.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13890	E5SVG6_TRISP_515_632	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13890	F0ZE20_DICPU_596_802	100

Sequence based PCA Plot of the family - PF13890 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=62 Length=8
Motif3 Start=38 Length=8
Motif4 Start=85 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay