3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03646

Details:

PFam ID : PF03646

PFam Domain Description : Repressor of phase-1 flagellin

Number of Sequence in 50% Dataset : 200

Number of Sequence in Full Dataset : 418

Average sequence length: 110.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03646	C9AR28_ENTFC_5_83	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03646	E1VPJ8_9GAMM_4_153	100

Sequence based PCA Plot of the family - PF03646 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay