3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00978

Details:

PFam ID : PF00978

PFam Domain Description : RNA dependent RNA polymerase

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 569

Average sequence length: 262.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00978	O89477_HEV_6_64	70.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00978	Q9IW21_NMV_65_195	99.2

Sequence based PCA Plot of the family - PF00978 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay