3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04452

Details:

PFam ID : PF04452

PFam Domain Description : RNA methyltransferase

Number of Sequence in 50% Dataset : 339

Number of Sequence in Full Dataset : 1399

Average sequence length: 215.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04452	D8LR28_ECTSI_185_326	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04452	B5YMY3_THAPS_17_295	100

Sequence based PCA Plot of the family - PF04452 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay