3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00834

Details:

PFam ID : PF00834

PFam Domain Description : Ribulose-phosphate 3 epimerase family

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 1448

Average sequence length: 195.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00834	Q9MRL7_DAUCA_1_42	84.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00834	A6LRS1_CLOB8_49_268	100

Sequence based PCA Plot of the family - PF00834 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=50 Length=8
Motif2 Start=2 Length=21
Motif3 Start=27 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay