3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13114

Details:

PFam ID : PF13114

PFam Domain Description : RecO N terminal

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 36

Average sequence length: 69

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13114	Q4HFN5_CAMCO_1_56	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13114	D3E525_GEOS4_5_81	100

Sequence based PCA Plot of the family - PF13114 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=20
Motif2 Start=1 Length=8
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay