3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01094

Details:

PFam ID : PF01094

PFam Domain Description : Receptor family ligand binding region

Number of Sequence in 50% Dataset : 747

Number of Sequence in Full Dataset : 1871

Average sequence length: 295.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01094	F2TVH9_9EUKA_157_417	65.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01094	D6PPC1_9BRAS_1_162	98.8

Sequence based PCA Plot of the family - PF01094 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=379 Length=11
Motif2 Start=92 Length=8
Motif3 Start=4 Length=11
Motif4 Start=396 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay