3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01191

Details:

PFam ID : PF01191

PFam Domain Description : RNA polymerase Rpb5, C-terminal domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 220

Average sequence length: 71.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01191	D6PJQ5_9ZZZZ_95_203	13.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01191	454R_IIV6_106_184	100

Sequence based PCA Plot of the family - PF01191 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=20
Motif2 Start=61 Length=8
Motif3 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay