3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07521

Details:

PFam ID : PF07521

PFam Domain Description : RNA-metabolising metallo-beta-lactamase

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 1623

Average sequence length: 41.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07521	Q8TVW4_METKA_274_302	45

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07521	D3QAY0_STANL_510_550	100

Sequence based PCA Plot of the family - PF07521 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=17
Motif2 Start=32 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay