3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01330

Details:

PFam ID : PF01330

PFam Domain Description : RuvA N terminal domain

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 1066

Average sequence length: 61.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01330	Q49342_MYCGE_27_85	24.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01330	RUVA_PROMP_1_69	99.9

Sequence based PCA Plot of the family - PF01330 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay