3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01765

Details:

PFam ID : PF01765

PFam Domain Description : Ribosome recycling factor

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 1190

Average sequence length: 162.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01765	C6UN80_HODCD_15_170	60.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01765	F0V1K2_9MOLU_6_193	100

Sequence based PCA Plot of the family - PF01765 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=20 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay