3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09233

Details:

PFam ID : PF09233

PFam Domain Description : Restriction endonuclease EcoRV

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 21

Average sequence length: 222.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09233	E9FK70_9STRE_10_249	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09233	E9FK70_9STRE_10_249	100

Sequence based PCA Plot of the family - PF09233 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=115 Length=8
Motif3 Start=159 Length=8
Motif4 Start=187 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay