3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03085

Details:

PFam ID : PF03085

PFam Domain Description : Rhoptry-associated protein 1 (RAP-1)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 35

Average sequence length: 214.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03085	Q17126_BABCA_41_291	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03085	Q17126_BABCA_41_291	100

Sequence based PCA Plot of the family - PF03085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay