3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00581

Details:

PFam ID : PF00581

PFam Domain Description : Rhodanese-like domain

Number of Sequence in 50% Dataset : 1437

Number of Sequence in Full Dataset : 10193

Average sequence length: 102.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00581	E4X053_OIKDI_127_185	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00581	A7ARY2_BABBO_194_286	99.9

Sequence based PCA Plot of the family - PF00581 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=165 Length=8
Motif3 Start=18 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay