3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03719

Details:

PFam ID : PF03719

PFam Domain Description : Ribosomal protein S5, C-terminal domain

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 1058

Average sequence length: 72.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03719	A0CLK5_PARTE_240_314	18.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03719	E9C5N2_9EUKA_332_406	100

Sequence based PCA Plot of the family - PF03719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=14 Length=17
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay