3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11781

Details:

PFam ID : PF11781

PFam Domain Description : RNA polymerase I-specific transcription initiation factor Rrn7

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 78

Average sequence length: 33.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11781	A3MT97_PYRCJ_1_28	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11781	E0VBB5_PEDHC_2_29	63

Sequence based PCA Plot of the family - PF11781 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay