3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01165

Details:

PFam ID : PF01165

PFam Domain Description : Ribosomal protein S21

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 610

Average sequence length: 56.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01165	A4ZZ27_9SPIO_1_48	30.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01165	C1N9G7_MICPC_129_190	93.5

Sequence based PCA Plot of the family - PF01165 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=12 Length=40

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay