3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00480

Details:

PFam ID : PF00480

PFam Domain Description : ROK family

Number of Sequence in 50% Dataset : 1049

Number of Sequence in Full Dataset : 4040

Average sequence length: 177.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00480	C2KYQ9_9FIRM_7_216	74.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00480	C0AU36_9ENTR_1_84	100

Sequence based PCA Plot of the family - PF00480 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=53 Length=8
Motif3 Start=5 Length=8
Motif4 Start=71 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay