3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01092

Details:

PFam ID : PF01092

PFam Domain Description : Ribosomal protein S6e

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 251

Average sequence length: 117.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01092	D3ZFW3_RAT_1_96	7.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01092	Q3LVW0_BIGNA_1_123	99.2

Sequence based PCA Plot of the family - PF01092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay