3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00072

Details:

PFam ID : PF00072

PFam Domain Description : Response regulator receiver domain

Number of Sequence in 50% Dataset : 8680

Number of Sequence in Full Dataset : 50760

Average sequence length: 111.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00072	D9YEJ1_9DELT_1_73	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00072	B9AE18_METSM_22_93	99.8

Sequence based PCA Plot of the family - PF00072 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=69 Length=8
Motif3 Start=42 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay