3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07506

Details:

PFam ID : PF07506

PFam Domain Description : RepB plasmid partitioning protein

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 245

Average sequence length: 165.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07506	B6R2V3_9RHOB_165_348	67

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07506	E8X2E5_ACISM_99_275	78

Sequence based PCA Plot of the family - PF07506 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=118 Length=8
Motif3 Start=17 Length=8
Motif4 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay