3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13814

Details:

PFam ID : PF13814

PFam Domain Description : Replication-relaxation

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 187

Average sequence length: 165.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13814	E1KL92_9FIRM_1_100	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13814	B6V2L8_BPSP1_35_230	98.9

Sequence based PCA Plot of the family - PF13814 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=27
Motif2 Start=168 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay