3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08771

Details:

PFam ID : PF08771

PFam Domain Description : Rapamycin binding domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 127

Average sequence length: 96.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08771	A2FRM9_TRIVA_1760_1850	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08771	B7G3H7_PHATC_1863_1980	100

Sequence based PCA Plot of the family - PF08771 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=60 Length=8
Motif2 Start=6 Length=18
Motif3 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay