3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04139

Details:

PFam ID : PF04139

PFam Domain Description : Rad9

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 166

Average sequence length: 227.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04139	F2USJ2_9EUKA_13_295	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04139	Q3KZ61_SCHJA_1_99	100

Sequence based PCA Plot of the family - PF04139 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay