3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11800

Details:

PFam ID : PF11800

PFam Domain Description : Replication protein C C-terminal region

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 223

Average sequence length: 191.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11800	D5QWV0_METTR_210_317	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11800	E0MTZ8_9RHOB_202_478	100

Sequence based PCA Plot of the family - PF11800 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=250 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay