3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09734

Details:

PFam ID : PF09734

PFam Domain Description : RNA polymerase III transcription factor (TF)IIIC subunit

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 195

Average sequence length: 281.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09734	A5AQ20_VITVI_99_791	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09734	Q5T7U1_HUMAN_23_230	100

Sequence based PCA Plot of the family - PF09734 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=681 Length=19
Motif2 Start=97 Length=11
Motif3 Start=643 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay