3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00636

Details:

PFam ID : PF00636

PFam Domain Description : Ribonuclease III domain

Number of Sequence in 50% Dataset : 336

Number of Sequence in Full Dataset : 2221

Average sequence length: 102.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00636	B3RZN6_TRIAD_67_232	84.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00636	A1CDG7_ASPCL_39_119	96.1

Sequence based PCA Plot of the family - PF00636 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=102 Length=8
Motif2 Start=3 Length=18
Motif3 Start=45 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay