3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05158

Details:

PFam ID : PF05158

PFam Domain Description : RNA polymerase Rpc34 subunit

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 207

Average sequence length: 227.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05158	A4HHE3_LEIBR_6_447	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05158	F0XCW0_9PEZI_7_430	100

Sequence based PCA Plot of the family - PF05158 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=161 Length=8
Motif2 Start=91 Length=8
Motif3 Start=102 Length=8
Motif4 Start=416 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay