3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11129

Details:

PFam ID : PF11129

PFam Domain Description : Rev protein of equine infectious anaemia virus

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 3

Average sequence length: 89

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11129	Q2NNQ3_9VIRU_155_332	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11129	E9KUE2_9RETR_33_165	100

Sequence based PCA Plot of the family - PF11129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay