3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01779

Details:

PFam ID : PF01779

PFam Domain Description : Ribosomal L29e protein family

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 150

Average sequence length: 38.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01779	B5KGP9_9CNID_35_103	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01779	F1LWX2_RAT_1_26	92.6

Sequence based PCA Plot of the family - PF01779 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=18 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay