3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06565

Details:

PFam ID : PF06565

PFam Domain Description : Repeat of unknown function (DUF1126)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 294

Average sequence length: 32.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06565	F0VJ02_NEOCA_426_454	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06565	D6WLV6_TRICA_250_270	100

Sequence based PCA Plot of the family - PF06565 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=4 Length=8
Motif2 Start=19 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay