3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00545

Details:

PFam ID : PF00545

PFam Domain Description : ribonuclease

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 334

Average sequence length: 87.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00545	D8USR3_9MICC_1620_1720	52.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00545	E3H5X3_ROTDC_2376_2488	89

Sequence based PCA Plot of the family - PF00545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=42 Length=8
Motif3 Start=22 Length=14
Motif4 Start=68 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay