3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08079

Details:

PFam ID : PF08079

PFam Domain Description : Ribosomal L30 N-terminal domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 252

Average sequence length: 68.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08079	A3F4R1_TAEAS_132_203	52.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08079	B0WTY2_CULQU_4_58	90.4

Sequence based PCA Plot of the family - PF08079 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=2 Length=8
Motif3 Start=39 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay