3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00077

Details:

PFam ID : PF00077

PFam Domain Description : Retroviral aspartyl protease

Number of Sequence in 50% Dataset : 155

Number of Sequence in Full Dataset : 7537

Average sequence length: 93.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00077	D6X3N4_TRICA_299_440	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00077	Q9WHI7_9RETR_11_111	99.7

Sequence based PCA Plot of the family - PF00077 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=128 Length=8
Motif4 Start=56 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay