3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06978

Details:

PFam ID : PF06978

PFam Domain Description : Ribonucleases P/MRP protein subunit POP1

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 168

Average sequence length: 141.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06978	C4V9M1_NOSCE_11_57	72

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06978	D8U3I0_VOLCA_110_191	100

Sequence based PCA Plot of the family - PF06978 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=5 Length=8
Motif2 Start=32 Length=8
Motif3 Start=162 Length=8
Motif4 Start=119 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay