3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00517

Details:

PFam ID : PF00517

PFam Domain Description : Retroviral envelope protein

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 4041

Average sequence length: 170.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00517	Q99268_9RETR_467_656	17.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00517	ENV_JEMBR_443_657	99.6

Sequence based PCA Plot of the family - PF00517 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=8
Motif2 Start=61 Length=8
Motif3 Start=32 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay