3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00101

Details:

PFam ID : PF00101

PFam Domain Description : Ribulose bisphosphate carboxylase, small chain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 480

Average sequence length: 88.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00101	B4WNZ5_9SYNE_360_455	27.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00101	Q6LBP3_LARLA_1_39	100

Sequence based PCA Plot of the family - PF00101 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8
Motif3 Start=88 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay