3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00788

Details:

PFam ID : PF00788

PFam Domain Description : Ras association (RalGDS/AF-6) domain

Number of Sequence in 50% Dataset : 197

Number of Sequence in Full Dataset : 737

Average sequence length: 88.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00788	F1S598_PIG_614_672	38.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00788	A9UUV1_MONBE_610_703	100

Sequence based PCA Plot of the family - PF00788 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=22 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay