3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02463

Details:

PFam ID : PF02463

PFam Domain Description : RecF/RecN/SMC N terminal domain

Number of Sequence in 50% Dataset : 1380

Number of Sequence in Full Dataset : 4409

Average sequence length: 703.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02463	E3SPM0_9CAUD_3_567	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02463	A9BK90_HEMAN_2_1069	99.9

Sequence based PCA Plot of the family - PF02463 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=20
Motif2 Start=574 Length=8
Motif3 Start=607 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay