3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03248

Details:

PFam ID : PF03248

PFam Domain Description : Rer1 family

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 187

Average sequence length: 160.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03248	E9IGG9_SOLIN_1_73	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03248	Q4MZ26_THEPA_4_191	100

Sequence based PCA Plot of the family - PF03248 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay