3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00411

Details:

PFam ID : PF00411

PFam Domain Description : Ribosomal protein S11

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 843

Average sequence length: 108.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00411	E6ZES1_ECTSI_78_148	67.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00411	D0D5D7_9RHOB_20_82	98.3

Sequence based PCA Plot of the family - PF00411 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay