3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00831

Details:

PFam ID : PF00831

PFam Domain Description : Ribosomal L29 protein

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 1132

Average sequence length: 57.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00831	D6THD6_9CHLR_2_64	11.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00831	A7AR19_BABBO_103_161	99.7

Sequence based PCA Plot of the family - PF00831 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=17
Motif2 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay